| Wed, March 25 | |
| 08:00 | Registration |
| 09:00 | Opening Alexander Reinefeld, Zuse Institute Berlin |
| 09:15 | KEYNOTE Achieving High Performance with FPGA Acceleration: Case Studies in Bioinformatics and Computational Biology Martin Herbordt, Boston University |
| 10:00 | Break |
|
Session: Tools & Methods Chair: Jan-Philipp Weiß, KIT | |
| 10:30 |
A Design Methodology for Reconfigurable Heterogeneous Architectures Philipp Mahr, Benjamin Andres, Harold Ishebabi and Christophe Bobda, University of Potsdam |
| 11:00 |
HMPP: A Directives-Based Compiler for Manycore Applications Stephane Bihan, CAPS enterprise |
| 11:30 |
The Future of FPGA Acceleration and Hybrid Systems Stefan Möhl, Mitrionics |
| 12:00 |
Simulation in the Many-Core Era Paolo Faraboschi, HP Labs |
| 12:30 | Lunch / Exhibition |
|
Session: Scalability for Many-Core Systems Chair: Thomas Steinke, ZIB | |
| 13:30 |
From Nano-Scale to Peta-Scale Ulrich Becker-Lemgau, Intel |
| 14:00 |
Scaling Applications on Cray Supercomputers Wilfried Oed, Cray |
| 14:30 |
Microsoft Parallel Computing Initiative Matej Ciesko, Microsoft |
| 15:00 |
SiCortex Cluster System Architecture Stephan Ebelt, MEGWARE Computer GmbH |
| 15:20 | Break |
|
Session: Towards Interoperability and Reliability Chair: John Brooke, Univ. of Manchester | |
| 15:50 |
A Modular Approach to Parallel Applications Burkhard D. Steinmacher-Burow, Sven Wagner, Jens Remus, IBM |
| 16:20 |
Advancing the Open Accelerator Ecosystem - Enhancing Open Standards in Interoperability, Portability and Reliability Eric A. Stahlberg, Wittenberg University / OpenFPGA / OpenAccelerator |
| 16:50 | Short Break |
| Panel Discussion | |
| 17:00 |
Programmability and Acceptance Requirements Moderator: Eric A. Stahlberg, Wittenberg University / OpenFPGA / OpenAccelerator |
| 18:30 |
Guided Tour through ZIB's HPC compute and storage facilities Hinnerk Stüben, ZIB |
| 20:00 | RECEPTION |
| Thu, March 26 | |
| 8:00 | Registration |
|
Session: Numerical Applications on Accelerators Chair: Stan Scott, Queen's University Belfast | |
| 08:30 | Invited Talk Emerging Hardware and Numerical Simulation: a Walk of Seven Bridges over the Gap Vincent Heuveline, Karlsruhe Institute of Technology |
| 09:15 |
An FPGA-Based Floating Point Solver for Band Structured Linear Equations Antonio Roldao Lopes, George Constantinides, and Eric Kerrigan, Imperial College London |
| 09:45 |
Leveraging the Synergy of Mitrion-C and the SGI RC-100 to Study Evaluation of Two Dimensional Numerical Integrals Charles J. Gillan, Thomas Steinke, Johannes Bock, Ivor Spence, Stan Scott, The Queen's University of Belfast and Zuse Institute Berlin |
| 10:15 |
Comparing NVIDIA and AMD GPU Computing: Performance, Flexibility, and Usability Michael Wagner and Guido Juckeland, Technische Universitäat Dresden |
| 10:45 |
Modeling DNA Radiation Damage on Many-core Architectures: Current GP-GPU and Prototype Clearspeed Implementation N. Sanna, I. Baccarelli and G. Morelli, CASPUR |
| 11:15 | Break |
| Chair: Thomas Steinke, ZIB | |
| 11:45 | KEYNOTE UCHPC - UnConventional High Performance Computing for FEM Simulations Stefan Turek, Technische Universität Dortmund |
| 12:30 | Lunch / Exhibition |
|
Session: Hybrid Systems Challenges Chair: Vincent Heuveline, KIT | |
| 13:30 |
SGI's Accelerator Enabling Program: Experiences in Running a Hybrid Cluster using NVDIA TESLA, ClearSpeed CATS and XDi FPGAs Matthias Fouquet-Lapar, SGI |
| 14:00 |
Application Acceleration with FPGAs and GPUs - Challenges and Opportunities Magnus Peterson, Synective Labs |
| 14:30 |
Sun Chip Multi Threading (CMT) and Accelerator Usage Roland Rambau, Sun |
| 15:00 | Break |
|
Session: FPGAs in Life Science Applications Chair: Bogdan Olech, West Pomeranian Univ. of Technology | |
| 15:30 |
Outlook Towards MRSC 2010 John Brooke, Manchester University |
| 15:45 |
Applying FPGA to the Molecular Docking Problem Imre Pechan, Bela Feher, Attila Berces, Budapest University of Technology and Economics, Chemistry Logic Ltd. |
| 16:15 |
Accelerating Virtual Screening of Compund Libraries Peter Szanto, Bela Feher, Attila Berces, Budapest University of Technology and Economics, Chemistry Logic Ltd. |
| 16:45 |
Synthesis of a Parallel Smith-Waterman Sequence Alignment Kernel into FPGA Hardware David Greaves, Satnam Singh, Sutirtha Sanyal; Microsoft Res. Cambridge, University Cambridge and Barcelona Supercomputer Center |
| 17:15 |
Tandem Mass Spectrometry Acceleration using FPGA Janos Lazanyi, Bela Feher, Istvan Palinkas, Budapest University of Technology and Economics, Evopro Informatics and Automation Ltd. |
| 17:45 |
Final Remarks MRSC 2009 Thomas Steinke, ZIB |
| 18:00 | Wrap Up |